PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160611.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 865aa MW: 99753.5 Da PI: 7.9271

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.7	7.1e-27	102	210	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkekdgkwe 77 +fY+eYAk++GFsv +++s++s+ +g++++++fvC+++g++++++ + +++ r++++ ++t+Cka+l+vk+ +dg w+ XP_019160611.1 102 SFYKEYAKSIGFSVIIKASRRSRISGKFIDAKFVCTRYGRKQKSSVSetleavanidgtnnipikKKRGRKNQSLSKTDCKACLHVKRGSDGMWV 196 5**************************************9999889************99999********************** PP FAR1 78 vtkleleHnHelap 91 ++++ +eHnHe++p XP_019160611.1 197 IHTFIKEHNHEIVP 210 *********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence
MRAVYWLTSR DIHRREKKKN IPLMGIDLEQ PSEELHRDKG NEVCCTEEAA ASAAMTVQHA 60 QENFRPKNTH LVSDGDRVPL SHHKFLEPRD GMEFESKEDA FSFYKEYAKS IGFSVIIKAS 120 RRSRISGKFI DAKFVCTRYG RKQKSSVSET LEAVANIDGT NNIPIKKKRG RKNQSLSKTD 180 CKACLHVKRG SDGMWVIHTF IKEHNHEIVP VQSYNVQGHR NLDQGHSNAD AMHAVRARTK 240 NMCASMHRQS GVAKKLENNG SRNVGAQNLA LDERDAEVML EYFLHMQDDN PNFFYALDLN 300 QEQCLRNAFW IDAKARLDYH HFCDAVFFDT AYIKNEYKLP LATFIGVNHH FQFLLFGCAL 360 IADESKSTFV WLMRAWLRAM GGQAPKVILT DEDTALKEAV AEVFPDSRHC FCLWHILSKI 420 PEKLGSVIRW CEKFSTKFNK CILKSVTDEQ FQKRWLKIVD RFDLRNDLWI QSLYEDRLRW 480 VPVYMNSIFL AGISTMQRLE SVSSILDKCM QRKTTLKEFL DQYKNILQEM GEDEAKADFE 540 TWHRKPVLKS PSPFGKQMAA LYTHAIFKKF QIEVLGVVAC HPKRESGNDE TATFRVQDFE 600 ENQDFIVFWN EETSDASCSC RLFEYKGILC RHIMIVLQMA GVYNIPSKYI LKRWTKDAKN 660 RETVRLVDSI VSRVQRYTDI CQRVFKLGDE GSLSQESYNL AFIALEKALR KCERVNSSIQ 720 YEVEPCSPSN QDLNNFEEAI QSNCAQKTNE KNESRRDKVQ LEQEGLAISI HDSWQQMGQL 780 NSRVATLDAY FSSHQVVPGV GQMNTISSIY SNQPGIQELG QLNTTAPMDN GPYLTQPRLH 840 GLTQLHFRPQ SLQNYFEMPE SLQDL

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence

MRAVYWLTSR DIHRREKKKN IPLMGIDLEQ PSEELHRDKG NEVCCTEEAA ASAAMTVQHA  60
QENFRPKNTH LVSDGDRVPL SHHKFLEPRD GMEFESKEDA FSFYKEYAKS IGFSVIIKAS  120
RRSRISGKFI DAKFVCTRYG RKQKSSVSET LEAVANIDGT NNIPIKKKRG RKNQSLSKTD  180
CKACLHVKRG SDGMWVIHTF IKEHNHEIVP VQSYNVQGHR NLDQGHSNAD AMHAVRARTK  240
NMCASMHRQS GVAKKLENNG SRNVGAQNLA LDERDAEVML EYFLHMQDDN PNFFYALDLN  300
QEQCLRNAFW IDAKARLDYH HFCDAVFFDT AYIKNEYKLP LATFIGVNHH FQFLLFGCAL  360
IADESKSTFV WLMRAWLRAM GGQAPKVILT DEDTALKEAV AEVFPDSRHC FCLWHILSKI  420
PEKLGSVIRW CEKFSTKFNK CILKSVTDEQ FQKRWLKIVD RFDLRNDLWI QSLYEDRLRW  480
VPVYMNSIFL AGISTMQRLE SVSSILDKCM QRKTTLKEFL DQYKNILQEM GEDEAKADFE  540
TWHRKPVLKS PSPFGKQMAA LYTHAIFKKF QIEVLGVVAC HPKRESGNDE TATFRVQDFE  600
ENQDFIVFWN EETSDASCSC RLFEYKGILC RHIMIVLQMA GVYNIPSKYI LKRWTKDAKN  660
RETVRLVDSI VSRVQRYTDI CQRVFKLGDE GSLSQESYNL AFIALEKALR KCERVNSSIQ  720
YEVEPCSPSN QDLNNFEEAI QSNCAQKTNE KNESRRDKVQ LEQEGLAISI HDSWQQMGQL  780
NSRVATLDAY FSSHQVVPGV GQMNTISSIY SNQPGIQELG QLNTTAPMDN GPYLTQPRLH  840
GLTQLHFRPQ SLQNYFEMPE SLQDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein