PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160719.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 654aa MW: 74068.9 Da PI: 7.1622

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.5e-21	76	159	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Yn+YA+++GFsvrk ++++++ +++i +++f+Cs+ g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel XP_019160719.1 76 VYNSYAYRLGFSVRKGHQRYKESTNTIQMKKFCCSEAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHEL 159 7**************************************99877....8999*******************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MEDGTEQTNS AVGDWHSIQG DLVIVFAIVP FVSEDIVDGS VSSDQVDIDV DGSSSIPVDQ 60 DLVGLVVSNA DEAFEVYNSY AYRLGFSVRK GHQRYKESTN TIQMKKFCCS EAGYKANSGV 120 KAYSKIDTRT GCGAFVQFDV GDDGLWTVTK HEKVHNHELY VFNKSHLLRS HRSVGDNQLL 180 YLQGLKDSGV ALADGIRRRQ STETDFFFDF ELDLDARFLM NERIESFVWL FKEFSRSMGG 240 KSPQTIMTYQ CAAMAAAISK VFPTSRHRLC IWHIEIEAEF QFYWTRLVTD YKCHKNTWLE 300 KLFDCREKWC PTFNKDYFSG VILSSQRSET TNHSISRRLS KTAGLCDFYS SFVSVISEWK 360 SKENGEDFRC AQGVPAMMME HVKLLSHARE VYTIEIYFLF EEQFMKGSAC HQEMVLNDGR 420 QQKYHVWRPD IDIIRHEVSF NAANLDISCN CKLMSELGIL CCHCIRILHV HCVSSIPDKY 480 ILKRWTKKVI DGRNVNIDSM VYNFGVPPSI WVFDISRKFQ RLVVSSQDSS VARKLCDEAV 540 DDVKKKVEAE VGHVHIEECG VSSSSGGVQN PSSRRLKCER NKRRSGVIEK KYSLARGRRS 600 AANKAALSTK GAVQCLVLEN ISKLAGDGYL VHPSSSSSDF VQFSKGLDDN VGVD

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MEDGTEQTNS AVGDWHSIQG DLVIVFAIVP FVSEDIVDGS VSSDQVDIDV DGSSSIPVDQ  60
DLVGLVVSNA DEAFEVYNSY AYRLGFSVRK GHQRYKESTN TIQMKKFCCS EAGYKANSGV  120
KAYSKIDTRT GCGAFVQFDV GDDGLWTVTK HEKVHNHELY VFNKSHLLRS HRSVGDNQLL  180
YLQGLKDSGV ALADGIRRRQ STETDFFFDF ELDLDARFLM NERIESFVWL FKEFSRSMGG  240
KSPQTIMTYQ CAAMAAAISK VFPTSRHRLC IWHIEIEAEF QFYWTRLVTD YKCHKNTWLE  300
KLFDCREKWC PTFNKDYFSG VILSSQRSET TNHSISRRLS KTAGLCDFYS SFVSVISEWK  360
SKENGEDFRC AQGVPAMMME HVKLLSHARE VYTIEIYFLF EEQFMKGSAC HQEMVLNDGR  420
QQKYHVWRPD IDIIRHEVSF NAANLDISCN CKLMSELGIL CCHCIRILHV HCVSSIPDKY  480
ILKRWTKKVI DGRNVNIDSM VYNFGVPPSI WVFDISRKFQ RLVVSSQDSS VARKLCDEAV  540
DDVKKKVEAE VGHVHIEECG VSSSSGGVQN PSSRRLKCER NKRRSGVIEK KYSLARGRRS  600
AANKAALSTK GAVQCLVLEN ISKLAGDGYL VHPSSSSSDF VQFSKGLDDN VGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-34	FAR1 family protein