PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019160724.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26183.7 Da    PI: 6.0351
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019160724.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF313.2e-101966249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ie +  r vtfskR+ +++ KA+ +   ++a + + ++ss+g ++ +
  XP_019160724.1 19 LIECDNARAVTFSKRKRTLFEKAKRVAASTGATIGIFLISSKGYMHAF 66
                    5888899**************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MEGEPERKNK GRQKIEMKLI ECDNARAVTF SKRKRTLFEK AKRVAASTGA TIGIFLISSK  60
GYMHAFGTCC VHAIINEYRA RRSNAGIAMA QNDDHQLDLL NGDPVDKLKQ ILECQDVSLL  120
LGPHFDPSNL EHVKAAYAWF DDCCTKLKAK KQQFQVSANE QMVCIPSFAN EFDLNVTAGS  180
PNQILVSANL VRGFNLNVAP TADDDEEMIS AASRVPSFNL NVTPGADDEE ETIRTSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.19e-15M-type_MADS family protein