PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160818.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 505aa MW: 56408.6 Da PI: 5.3556

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.2	7.9e-10	163	186	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C+++++tG Ck+G CkF+H++ XP_019160818.1 163 EDCSYYMKTGNCKFGFHCKFNHPR 186 89********************96 PP
2	zf-CCCH	22	2.8e-07	211	233	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+f++ + Ck+G +Ck++H++ XP_019160818.1 211 ECKFYLTSAGCKFGKSCKYNHSR 233 8********************95 PP
3	zf-CCCH	41	3.2e-13	254	279	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG CkyG++C+F+H++ XP_019160818.1 254 GEKECPYYMRTGSCKYGSNCRFHHPE 279 7899********************96 PP
4	zf-CCCH	27.6	4.9e-09	390	416	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f +tG Cky ++CkF+H++ XP_019160818.1 390 PGQPECSYFIKTGDCKYKSNCKFHHPK 416 5789*********************96 PP
5	zf-CCCH	38.3	2.2e-12	436	460	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G++CkF H+ XP_019160818.1 436 DQAICSYYSRYGICKFGPNCKFDHP 460 6899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MEEQLQNQHQ SDAENQELGL ELQSLTNQSL SPDPNPQNPP QSPPLLSEDD DDDDDYDEKA 60 MRAISDELQD LVVTQAYLDR DRNQSYGGSE KSVGDDDGYG HAYGDHDGYD VYGDDDRSGG 120 WAESGDRGDR VFKEGDTGGG DDGFNASNGR KFVFHYPLRP DAEDCSYYMK TGNCKFGFHC 180 KFNHPRRKTQ WPKDKGTLKE ENQERGAVQT ECKFYLTSAG CKFGKSCKYN HSREKVPASP 240 IQEFNFLGLP LRPGEKECPY YMRTGSCKYG SNCRFHHPEP TIMAGEDSSS GYSKGRSIPM 300 QGSSQSTVTS WSSSRPTNET TSYVPPMMYP PTQSIPSPTP EWNNYQAPVY QASEKSLPTP 360 PAFAMSNSGT EKFNPRHSLP LLGEDYPERP GQPECSYFIK TGDCKYKSNC KFHHPKTQLT 420 RTQTLLNDKG LPLRPDQAIC SYYSRYGICK FGPNCKFDHP DNYSHSPSSG WSEFDQPPFG 480 NPDSTNGARV VRKGSGSGSL VQQSV

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MEEQLQNQHQ SDAENQELGL ELQSLTNQSL SPDPNPQNPP QSPPLLSEDD DDDDDYDEKA  60
MRAISDELQD LVVTQAYLDR DRNQSYGGSE KSVGDDDGYG HAYGDHDGYD VYGDDDRSGG  120
WAESGDRGDR VFKEGDTGGG DDGFNASNGR KFVFHYPLRP DAEDCSYYMK TGNCKFGFHC  180
KFNHPRRKTQ WPKDKGTLKE ENQERGAVQT ECKFYLTSAG CKFGKSCKYN HSREKVPASP  240
IQEFNFLGLP LRPGEKECPY YMRTGSCKYG SNCRFHHPEP TIMAGEDSSS GYSKGRSIPM  300
QGSSQSTVTS WSSSRPTNET TSYVPPMMYP PTQSIPSPTP EWNNYQAPVY QASEKSLPTP  360
PAFAMSNSGT EKFNPRHSLP LLGEDYPERP GQPECSYFIK TGDCKYKSNC KFHHPKTQLT  420
RTQTLLNDKG LPLRPDQAIC SYYSRYGICK FGPNCKFDHP DNYSHSPSSG WSEFDQPPFG  480
NPDSTNGARV VRKGSGSGSL VQQSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-101	C3H family protein