PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161025.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 409aa MW: 46190.9 Da PI: 9.0193

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.2	1.1e-12	2	63	34	89
FAR1 34 vCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 vCs+eg++e++++ +k+rr+r++tr+gC a+++ k+++ g ++v+++e+eH+H l XP_019161025.1 2 VCSREGFKETKNTGpsvsdaPTKARRRRPSTRVGCMARIVFKRDSAGMYVVMTFEEEHTHCL 63 9*******9998899999999*************************************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MVCSREGFKE TKNTGPSVSD APTKARRRRP STRVGCMARI VFKRDSAGMY VVMTFEEEHT 60 HCLYEESYKP FLKVNRKLDV GHQQFITNCS KVNVGASKSF DIYAEMVGGV ENVGCTVSCV 120 PFTGVDNHKK CMTFAAALIA REDVDLYCWA LRNFKSAMGS TPRITVTDQD PAMKVAIAKE 180 FPETRHRYCM WHIMTKVSDK VSPEMARNEE FRRELNGVVW NDSATSENFE VAWKGVIEKY 240 GLQENAWLKR MYDEHATWVP ACFEDVFMGG LLRTTSRSEA ENRIFRTNTN KHMCLSEFFI 300 RCLGLAQGDS SKLEPIRKTL EEFEATWCES GVERGGTDKG KRVIMESYCG APQPKAVNVH 360 PPPVSSNKGS GKRIRTAKEI AMKEQSKKKR TCKTCGLATG HNSRSCPQK

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MVCSREGFKE TKNTGPSVSD APTKARRRRP STRVGCMARI VFKRDSAGMY VVMTFEEEHT  60
HCLYEESYKP FLKVNRKLDV GHQQFITNCS KVNVGASKSF DIYAEMVGGV ENVGCTVSCV  120
PFTGVDNHKK CMTFAAALIA REDVDLYCWA LRNFKSAMGS TPRITVTDQD PAMKVAIAKE  180
FPETRHRYCM WHIMTKVSDK VSPEMARNEE FRRELNGVVW NDSATSENFE VAWKGVIEKY  240
GLQENAWLKR MYDEHATWVP ACFEDVFMGG LLRTTSRSEA ENRIFRTNTN KHMCLSEFFI  300
RCLGLAQGDS SKLEPIRKTL EEFEATWCES GVERGGTDKG KRVIMESYCG APQPKAVNVH  360
PPPVSSNKGS GKRIRTAKEI AMKEQSKKKR TCKTCGLATG HNSRSCPQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	5e-32	FAR1 family protein