PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019161074.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 348aa    MW: 38783.1 Da    PI: 8.7562
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019161074.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.21e-1845136185
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekk....rtsessstcpyfdql 85 
                     +W+++e+ aLi+a+r+++ +lrrg+l++++W+ev++ +         ++++qC++k+e+l+kry+++ +++      r+ +  s++++f+ +
  XP_019161074.1  45 CWSHEETIALIDAYRDKWYSLRRGNLRANHWQEVADDVavrCPVDSPKTAVQCRHKMEKLRKRYRAEIQRAAPyggvRSHRYCSSWVLFKLM 136
                     8*************************************7555556799*****************998887541111234444556666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MAASSSPSNQ DLPATPPENP LSIVTVAAAG AGAGAASSRR LPPPCWSHEE TIALIDAYRD  60
KWYSLRRGNL RANHWQEVAD DVAVRCPVDS PKTAVQCRHK MEKLRKRYRA EIQRAAPYGG  120
VRSHRYCSSW VLFKLMDAME RGTNAAAASP PPDEEELEDD AEDIKQNSVK HIGDIYNQNN  180
LNSNKRSSFQ GPMTNGGTGV RIRIPTLPMA KPYSKFDEIL AQNPNPNTSY GSNRMLKGDC  240
FGKKSADLGK RVSGEEEVGE KRKADPIAEM VTAIKALGDG FLKMERMKME LARELEEMKM  300
EMEMKRTEMI LESQQRIVEA FANALSEKNN SNKKAKRMPT PECQMPHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-55Trihelix family protein