PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161151.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 757aa MW: 84951.6 Da PI: 7.3117

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.7	6e-16	163	259	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY++YA vGF+ r+ + +++ r+g +++r+ Cs+eg++++ ++ +r+r+++++gC+ak++ k +++g ++v+ le+ H+H XP_019161151.1 163 FYKRYAGYVGFDCRQGTIRRR-RDGVVVERQVFCSREGFKKSIYSTqstcvgdgkPIVVKRRRVTNKVGCNAKVVFKHKSNGLFVVHFLEERHTH 256 9*************98886.9999***********988888899998875566789999**************************** PP FAR1 88 ela 90 ++ XP_019161151.1 257 VMC 259 998 PP

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence
MGLVCVKGTS IDVVVEGSGG VCNTGHSNDD GVDRSGGVCD EGYHAINLDP VGFICDKDTS 60 IDAGVEGSGG VCNTEHSTDG DHIDGCVEGS GGQCDEGNST DVAVETSGQG ANEHCLTDVE 120 AEDNAFVLEM SPGLTKYWRP VCSDSLKPVL GQTFDSLDCA IVFYKRYAGY VGFDCRQGTI 180 RRRRDGVVVE RQVFCSREGF KKSIYSTQST CVGDGKPIVV KRRRVTNKVG CNAKVVFKHK 240 SNGLFVVHFL EERHTHVMCS IIAKQFLKVN RSLDAGHQMF IASCVRANIG YVRSYKLFKE 300 IVGEYSNVGA TGVDFKNFKH DLMAYILNGD AQLFIDTLFK RRELCEAFEF EYDVDDVDQL 360 TRVFWADAVS RKNFALFGDV VLFDATYRSN RYNLVFVPFT GIDNHKRSIT FGVGLLTRED 420 VDSYVWLLER FKKTMRHEPI CVVTDQDPAV KIAVARVFGT SKHRFCMWHI MCKVGEKVGP 480 VLAKDEVFMR KLNGIVWNKS IDSKAFEDSW SRIIEEYGLV DNSWFRYLFE SRTFWASPYF 540 HDEFMSRFVR TTSRSESQNS FFGSFSNGHS SLVEFLVHFD SAISAQRHAQ AKLTADSESC 600 FPVLKTPLAL EKHAMDVYTI SVFYDVQVEI CEGCFSCRVV SLCECDGKAY FFVFKDRGLE 660 RIPSMYLVSR WTKAACLKPI FDIDDTVVDQ SAKVNVRVIT KGSTMEVRDP IKVKNKGGGK 720 RMKSAREKAV NKCVKQSRKC HTCDEYGHNS RTCPLNG

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence

MGLVCVKGTS IDVVVEGSGG VCNTGHSNDD GVDRSGGVCD EGYHAINLDP VGFICDKDTS  60
IDAGVEGSGG VCNTEHSTDG DHIDGCVEGS GGQCDEGNST DVAVETSGQG ANEHCLTDVE  120
AEDNAFVLEM SPGLTKYWRP VCSDSLKPVL GQTFDSLDCA IVFYKRYAGY VGFDCRQGTI  180
RRRRDGVVVE RQVFCSREGF KKSIYSTQST CVGDGKPIVV KRRRVTNKVG CNAKVVFKHK  240
SNGLFVVHFL EERHTHVMCS IIAKQFLKVN RSLDAGHQMF IASCVRANIG YVRSYKLFKE  300
IVGEYSNVGA TGVDFKNFKH DLMAYILNGD AQLFIDTLFK RRELCEAFEF EYDVDDVDQL  360
TRVFWADAVS RKNFALFGDV VLFDATYRSN RYNLVFVPFT GIDNHKRSIT FGVGLLTRED  420
VDSYVWLLER FKKTMRHEPI CVVTDQDPAV KIAVARVFGT SKHRFCMWHI MCKVGEKVGP  480
VLAKDEVFMR KLNGIVWNKS IDSKAFEDSW SRIIEEYGLV DNSWFRYLFE SRTFWASPYF  540
HDEFMSRFVR TTSRSESQNS FFGSFSNGHS SLVEFLVHFD SAISAQRHAQ AKLTADSESC  600
FPVLKTPLAL EKHAMDVYTI SVFYDVQVEI CEGCFSCRVV SLCECDGKAY FFVFKDRGLE  660
RIPSMYLVSR WTKAACLKPI FDIDDTVVDQ SAKVNVRVIT KGSTMEVRDP IKVKNKGGGK  720
RMKSAREKAV NKCVKQSRKC HTCDEYGHNS RTCPLNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	225	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-69	FAR1 family protein