PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161195.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 837aa MW: 94790.9 Da PI: 7.9782

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.4	3.8e-21	132	216	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019161195.1 132 VYNSYAYRLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 216 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence
MDVEDTFKSK KNFIWRLVKG RTCFGAVVIS SNADFKAAIS GPLGSQLDPY MTEAMACWEA 60 LSWLKDKGCG EIILHLDCLN RQIMLWIFSE GIVDGSVSSD QVDVDVDGSS SIPIDQDLVG 120 LVVSNADEAF EVYNSYAYRL GFSVRKGHQR YKGSSNTIQM KKFCCSKAGY KANSGVKAYS 180 KIDTRTGCGA FVQFDVGDDG LWTVTKHEKV HNHELCVFNK SHLLRSHRSV GDNQLLYLQG 240 LKDSGVALAD GIRFLKHQSG GSPLVGFTSR DAYNSMAADT VKRLDGTDSN SLIEIFRRRQ 300 STETDFFFDF ELDLDARLCS FFWRDGQMRR DYEVFGDLLV HDTTYRTNKY DMICAPFVGM 360 NHHCMNVMFG CGFLMNERIE SFVWLFKVFS RSMGDKSPQT IMTDQCAAMA AAISKVFPTS 420 RHRLCIWHIG ENSKKHIKTL RSNKDFLDMF NYVLKYTETE AEFQFYWTRL VTDYKCHKNT 480 WLEKLYDCRE KWCPAFNKDY FSGGILSSQR SETTNHSISR RLSKTAGLCD FYSSFVSVIS 540 EWRSKENGED FRCAQGVPAM MMEHVKLLSH AREVYTIEIY FLFEEQFMKG SACHQEMVLN 600 DGHQQKYHVW RPDIDIIRHE VSFNAANLDI SCSCKLMSEL GILCCHCIRI LHVHCVSSIP 660 DKYILKRWTK KVIDGRNVNI DSMVHNVGVP PSIWVFDISR KFQRLVVSSQ DSSVARKLCD 720 EAVDDVKKKV EAEVGHVHIE ECGVSSSSGG VQNPSSRRLK GERNKRRSGV IEKKYSLARG 780 RRSAANKAAL STKGAVQSLV LENISKLAGD GYLVHPSSSS SDFVQFSKGL DDNVGVD

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence

MDVEDTFKSK KNFIWRLVKG RTCFGAVVIS SNADFKAAIS GPLGSQLDPY MTEAMACWEA  60
LSWLKDKGCG EIILHLDCLN RQIMLWIFSE GIVDGSVSSD QVDVDVDGSS SIPIDQDLVG  120
LVVSNADEAF EVYNSYAYRL GFSVRKGHQR YKGSSNTIQM KKFCCSKAGY KANSGVKAYS  180
KIDTRTGCGA FVQFDVGDDG LWTVTKHEKV HNHELCVFNK SHLLRSHRSV GDNQLLYLQG  240
LKDSGVALAD GIRFLKHQSG GSPLVGFTSR DAYNSMAADT VKRLDGTDSN SLIEIFRRRQ  300
STETDFFFDF ELDLDARLCS FFWRDGQMRR DYEVFGDLLV HDTTYRTNKY DMICAPFVGM  360
NHHCMNVMFG CGFLMNERIE SFVWLFKVFS RSMGDKSPQT IMTDQCAAMA AAISKVFPTS  420
RHRLCIWHIG ENSKKHIKTL RSNKDFLDMF NYVLKYTETE AEFQFYWTRL VTDYKCHKNT  480
WLEKLYDCRE KWCPAFNKDY FSGGILSSQR SETTNHSISR RLSKTAGLCD FYSSFVSVIS  540
EWRSKENGED FRCAQGVPAM MMEHVKLLSH AREVYTIEIY FLFEEQFMKG SACHQEMVLN  600
DGHQQKYHVW RPDIDIIRHE VSFNAANLDI SCSCKLMSEL GILCCHCIRI LHVHCVSSIP  660
DKYILKRWTK KVIDGRNVNI DSMVHNVGVP PSIWVFDISR KFQRLVVSSQ DSSVARKLCD  720
EAVDDVKKKV EAEVGHVHIE ECGVSSSSGG VQNPSSRRLK GERNKRRSGV IEKKYSLARG  780
RRSAANKAAL STKGAVQSLV LENISKLAGD GYLVHPSSSS SDFVQFSKGL DDNVGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-81	FAR1 family protein