PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019161314.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 279aa    MW: 32645.1 Da    PI: 5.4652
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019161314.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.8e-2171124356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q+++Le+ F  ++++ ae+r+eLA++lgL  rqV vWFqNrRa++k
  XP_019161314.1  71 KKRRLTSQQVDVLERSFSGEKKVEAERRKELASNLGLHPRQVAVWFQNRRARWK 124
                     56689************************************************9 PP
2HD-ZIP_I/II114.47.1e-3771161292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kkrrl+++qv +LE+sF+ e+k+e er++ela++Lgl+prqvavWFqnrRAR+k+kqlE+dy+ Lk+++d l ++ + + k++++L++e++
  XP_019161314.1  71 KKRRLTSQQVDVLERSFSGEKKVEAERRKELASNLGLHPRQVAVWFQNRRARWKAKQLERDYDELKSSHDYLLSHYNFILKQNQKLKAEVN 161
                     9**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MERRMEESGR FFFNPSSHAD VLFLGKADPL FPGGSWSATK MEESLKRRAS CMFSGPQSDE  60
EYYEEQSSSD KKRRLTSQQV DVLERSFSGE KKVEAERRKE LASNLGLHPR QVAVWFQNRR  120
ARWKAKQLER DYDELKSSHD YLLSHYNFIL KQNQKLKAEV NLLSKKLEGN CKEVDDDDEG  180
KNAPPSRMKA EKKCDFTRIH SSIGHRDKIP EEEYGNPKQE LLMDNYYYYC VCGSGNTYNN  240
LHNIDYEEEE EDMDHHVCNS TPHAQTTTDD DEPLGWFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-50HD-ZIP family protein