PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019161319.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family E2F/DP
Protein Properties Length: 270aa    MW: 30303.3 Da    PI: 6.5209
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019161319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.35.3e-2349128471
         E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +Lr+++++   ++ k+++ g++t++eva+e++++               d+kn+rRR+YD+lNVL+al++++k +++ei+wkg
  XP_019161319.1  49 GGLRQYSNM---VCMKVKDkGRTTYSEVADEIIADfratevnssvsmnesDEKNIRRRVYDVLNVLMALDIVTK-DRKEIQWKG 128
                     699*****9...****9999******************************************************.*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MDGKFLMQHS KGQYPFLDAV CYVDNNEDID PSGPNSVEKT KRGSKVVGGG LRQYSNMVCM  60
KVKDKGRTTY SEVADEIIAD FRATEVNSSV SMNESDEKNI RRRVYDVLNV LMALDIVTKD  120
RKEIQWKGLP TSAGVDMDEI KGMRAKLKDE INKKTAYLKD LEDQIAGHQA LIWRNQQLYD  180
SKNSPTKGFP LPFLIAKTAP HATVEIEISE DMQLVHFDFN STPFSLHDDA YVLKLMRHYR  240
LLEGAQASQT SAILSSSPCS DVDSSVGGRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-83E2F/DP family protein