PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019161361.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 184aa    MW: 20594.7 Da    PI: 7.417
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019161361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.33e-4412110199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++Cv+apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+
  XP_019161361.1  12 PCAACKFLRRRCQPGCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQKELD 106
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_019161361.1 107 ATNA 110
                     9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MSSSSSSYSN PPCAACKFLR RRCQPGCVFA PYFPPEEPQK FANVHKIFGA SNVSKLLNEI  60
QPHQREDAVN SLAYEAEARL KDPVYGCVGA ISVLQRQVLR LQKELDATNA DLMRYARNEM  120
SSCGHGYHPT PDDNNNMNSY QMYNQQRSSS SQYGRSVYGQ SYGMPNYSSQ WTNSSSGDHN  180
PEGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.11e-67LBD family protein