PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161702.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 304aa MW: 32871.5 Da PI: 6.9727

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.5	7e-36	62	141	3	81
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 +k++++ ++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt+s +as+ a++s s+ XP_019161702.1 62 PKRSSNRDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGSMPASALaAAGASISM 141 7999***********************************************************77777555322222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MDPKGSNQLD EDERLSNSKA INTNNNNVDE NSKRAVAEVK DFQIMVADKE EGGKRQQQLA 60 LPKRSSNRDR HTKVDGRGRR IRMPALCAAR IFQLTRELGH KSDGETIQWL LQQAEPSIIA 120 ATGTGSMPAS ALAAAGASIS MPMGMGLNNQ NLDELGAQVH MGAVDSNSRA AAWPMVGGNL 180 GRHHISTPGL WPPAAAFMSS SSSSSSSTST TNLGSDTSNY QHKGGFSGFD LPFTHINPMS 240 FTSLLSATNP QLPGLELGLS QDAHIGVLNN QALTHIYHQQ QQMEHPRMQN QHQPSPKDDS 300 RESE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	3e-64	TCP family protein