PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162118.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 176aa    MW: 19742 Da    PI: 6.2446
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162118.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.24.2e-5223119197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     +reqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvt+eas+kc+rekrkt+ngdd++wal++lGf+dy+ p+++yl++yr++e+
  XP_019162118.1  23 MREQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFIGFVTGEASEKCRREKRKTLNGDDVCWALGSLGFDDYAPPVRTYLHRYRQVER 117
                     59********************************************************************************************9 PP

           NF-YB  96 ek 97 
                     ek
  XP_019162118.1 118 EK 119
                     97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MDDNIEGQKY SFSSGDDDGV MMMREQDRLL PIANVGRIMK QILPPNAKIS KEAKETMQEC  60
VSEFIGFVTG EASEKCRREK RKTLNGDDVC WALGSLGFDD YAPPVRTYLH RYRQVEREKA  120
GEHKAAGNNG GRKGLAEEPA AGDDNYLKGE PAVVRYSSSE TTTVCHNSFQ LHHQFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-58NF-YB family protein