PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162121.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 324aa    MW: 37002.5 Da    PI: 6.4236
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.47.1e-31651562102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+y++++++++++++sw+++g+ +vv+d ++fa ++Lp+yF+hsn + F  QLn YgF+k + ++         weF+h++F++gkk+ l+k
  XP_019162121.1  65 FVRKIYDMVNNPNTDSIVSWNSDGSRLVVWDAHKFAAEILPTYFRHSNSSTFFCQLNAYGFRKADWDR---------WEFQHQWFRRGKKTWLNK 150
                     9***************************************************************9998.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_019162121.1 151 IKRRTT 156
                     ***987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MEAEQKGGVI ILDLDNNPSE TAKVAPGATI HSYSELSVGD SSPSSPPLSA SSSSCFKKEK  60
VEAPFVRKIY DMVNNPNTDS IVSWNSDGSR LVVWDAHKFA AEILPTYFRH SNSSTFFCQL  120
NAYGFRKADW DRWEFQHQWF RRGKKTWLNK IKRRTTRSSR RVPQEQKQKH QPPHDEETSG  180
VKAEKEIKEM LDEQNGMKME IKQLQENQVI LAKKLASIRQ AETPDVKGRK LFLLMAQDFL  240
ESTKGKTPVE EESPNSIQEN KESNDVLARS DTNSRSESHT RMEKLVEEGE DIMIGVENLL  300
EGPADWEDYV KKLEEKGADL KTRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.13e-30HSF family protein