PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162201.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 247aa    MW: 27777.9 Da    PI: 4.8082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162201.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-1875132255
             AP2   2 gykGVrwdkkrgrWvAeIrd.pse.ng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr++  +g+WvAeIr+ +++ +  k+  +r++lg+f ta eAa a+++a++ ++g
  XP_019162201.1  75 TYRGVRQRV-WGKWVAEIREpVYTsDEyKSkgTRIWLGTFPTAGEAALAYDEAARVMYG 132
                     69*****99.**********766665594446**********************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MADGEKRKSR RRRNGSESVE EILLRWKKLN NAPVEANAAT NTINGGIKKR VKFPAKASRK  60
GCMAGKGGPE NSGCTYRGVR QRVWGKWVAE IREPVYTSDE YKSKGTRIWL GTFPTAGEAA  120
LAYDEAARVM YGPNAILNFP DSPALDKMSD SSNEVYAAEE SKDVFMNPQP LDFRSSTECG  180
RTDCDENEVF HDLRKRGENM ELLQKEQITV DAVYNTQDEE DLEAALSQLV ESDDFDFSSF  240
FNLLFSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1752RKSRRRRNGSESVEEILLRWKKLNNAPVEANAATNTINGGIKKRVK
21055RKSRRRRNGSESVEEILLRWKKLNNAPVEANAATNTINGGIKKRVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.12e-32ERF family protein