PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162251.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 240aa MW: 26672.6 Da PI: 6.5101

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 rg+W++eEd++l++ ++++G g+W+ I++ g + R++k+c++rw +yl XP_019162251.1 14 RGAWSKEEDQILINHINKYGHGNWRNIPKNAGiL-RCGKSCRLRWVNYL 61 89****************************55.**********97 PP
2	Myb_DNA-binding	47	6e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T eE+ l+v+++k +G++ W++Ia++++ gRt++++k+ w++ XP_019162251.1 67 RGHFTSEEEFLIVKLHKIFGNR-WALIAAKLP-GRTDNEIKNIWHT 110 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MGRAPCCEKT AVKRGAWSKE EDQILINHIN KYGHGNWRNI PKNAGILRCG KSCRLRWVNY 60 LRPDIKRGHF TSEEEFLIVK LHKIFGNRWA LIAAKLPGRT DNEIKNIWHT RLKKRLHEFD 120 IPADNQVAGD TLKNDSATNF EGAAPSPPAE DNDPATNNIL PPHSKSSSGA AGAAAAAPNN 180 PSDGGSAGDD DQFWTQINDK SGFEFNGADF NVGGVDPGSL QFWQDHLLTW NDDEFLDLWN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	1e-64	MYB family protein