PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162253.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 246aa    MW: 27810.5 Da    PI: 6.6747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-1564116155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR+riN  ++ Lr+llP  +   +++Kls  +++ ++v+YI +Lq
  XP_019162253.1  64 KKLSHNASERDRRKRINALYSSLRSLLPDsD---QARKLSIPATVSRVVKYIPELQ 116
                     6789*************************66...*******************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MLAFSSPLSF PIFPSPLWPL EESIRHQEFN SDMYRDDMTF LDPHGSSESF KFSESNGGTA  60
MEIKKLSHNA SERDRRKRIN ALYSSLRSLL PDSDQARKLS IPATVSRVVK YIPELQKQVE  120
RLQQKKEELG SRICRQESSS AEFNKRRRVE TQSSIGAVSV TRVGERQVAI HLCTNNGSKV  180
SFADAISCLE KEGMVLTDSS SSQTLENRVF CTLHLQMNGT PGMEVDELKE KVLSCFEEKE  240
ELLALN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-46bHLH family protein