PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162267.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 222aa    MW: 25799.2 Da    PI: 10.197
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.12.4e-32231272102
                     HHHHHHHHHCTG.............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
    HSF_DNA-bind   2 Flkklyeilede.............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                     Fl k+y++le+e             + ++++sw+ +g+ fvv+ + ef++ +Lp+yFkh+nf+SF+RQLn+YgFkkv +++         weF+h
  XP_019162267.1  23 FLVKTYDLLEEEerrreeggvenerAQEKIVSWNGQGTGFVVWSPPEFSELLLPRYFKHNNFSSFIRQLNTYGFKKVASKR---------WEFQH 108
                     99********666666666666666999**************************************************999.........***** PP

                     SXXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                     ++F+kg+k+ll +i rkk 
  XP_019162267.1 109 DKFRKGSKHLLIEISRKKV 127
                     *****************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MAADAPAPAP APSSSRVKCP APFLVKTYDL LEEEERRREE GGVENERAQE KIVSWNGQGT  60
GFVVWSPPEF SELLLPRYFK HNNFSSFIRQ LNTYGFKKVA SKRWEFQHDK FRKGSKHLLI  120
EISRKKVEPS GFPAYLRANE EASTSSSMAA ATTSISQVDI NTRKLLMEEN RNLRKERMEL  180
QTQIAHFKTL EIRLLECLST YMGNHNHHHH HHRQHNKFRR LS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-35HSF family protein