PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162286.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 166aa MW: 18626.9 Da PI: 7.0439

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.1e-19	15	69	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q++ Le F+ n++++a+++ +LA++lgL+ rq+ +W+qN+Ra++k XP_019162286.1 15 CQKKRLTQDQVRLLEGSFNVNNKLDADSKSQLAQQLGLPPRQIAIWYQNKRARRK 69 567789***********************************************99 PP
2	HD-ZIP_I/II	100.1	2.1e-32	16	106	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl+++qv+lLE sF+ ++kL+ + K++la++Lgl prq+a+W+qn+RAR k++ lE+d++a++++++++ ++nerL++ev++ +e l+ XP_019162286.1 16 QKKRLTQDQVRLLEGSFNVNNKLDADSKSQLAQQLGLPPRQIAIWYQNKRARRKSQSLEVDHKAMHERLEEVLSDNERLREEVQKAQEMLQ 106 69**********************************************************************************9998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MDNFQSQTRK GLFKCQKKRL TQDQVRLLEG SFNVNNKLDA DSKSQLAQQL GLPPRQIAIW 60 YQNKRARRKS QSLEVDHKAM HERLEEVLSD NERLREEVQK AQEMLQVAAA VAPYSCSSGD 120 EAGGSLGLLH GSSKELYACL LDEHESQFGT SPADLLHNFF APPGLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-29	HD-ZIP family protein