PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162320.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family RAV
Protein Properties Length: 335aa    MW: 37275.8 Da    PI: 8.2033
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.91.6e-104390154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s++kGV    ++g W A+I+       + +r++lg+f t+e+Aa+a++ a+ +l+
  XP_019162320.1 43 SRFKGVV-GQQSGNWGAQIYA------NhQRIWLGTFRTEEDAAAAYDSAAIRLR 90
                    6899996.5668******999......44**********************9986 PP
2B386.12.9e-27164256184
                     EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+ltpsdv+k++rlv+pkk+a ++         +g  + +++l+++d+  rsW+++++y+k+s+++v+t+GW++Fvk++g+k +D+v+F++
  XP_019162320.1 164 FKKELTPSDVGKLNRLVIPKKHAVKFfprtleaaaDGCGADDVELVFYDKAMRSWKFRYCYWKSSQSFVFTRGWNRFVKDKGIKPRDVVIFSV 256
                     89**************************9999888444457899***********************************************94 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MVASGTTNVT TVEASDSGSS NEQHRRQKRQ RPEANAAVNV GSSRFKGVVG QQSGNWGAQI  60
YANHQRIWLG TFRTEEDAAA AYDSAAIRLR CGDAHRNFPW TSITLQEPSF QAQFSTGEIL  120
KMIKDGSYVP KFSDHCKHLA LTGQPVGISP RAGDEPGSVL RELFKKELTP SDVGKLNRLV  180
IPKKHAVKFF PRTLEAAADG CGADDVELVF YDKAMRSWKF RYCYWKSSQS FVFTRGWNRF  240
VKDKGIKPRD VVIFSVYEYK DNISGPETRS ICVIDVEYTD HSDEGENNSD NGVEIKTGKG  300
SVDKGDEEGR EGVEMELRNK AAKPAGFMLF GVQII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-82RAV family protein