PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162860.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 247aa    MW: 25936.8 Da    PI: 7.8788
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.71.5e-41481471100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ael+
  XP_019162860.1  48 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVAKMLLEVPEGQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQFLQAELN 142
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_019162860.1 143 AVRAE 147
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MERVDEIIGR KLLKTEIEAA SLSPEMVMAG RRQGLGPAAG MTLNTITPCA ACKLLRRRCA  60
EECPFSPYFS PHEPHKFAAV HKVFGASNVA KMLLEVPEGQ RADAANSLVY EANVRLRDPV  120
YGCMGAISAL QQQIQFLQAE LNAVRAELLR HKYREAAAAA ANSIITSAPS AAAALAAGAV  180
SVVELPQAPP TPTPPPPPPP PSVLVVSSSS SSSSTSPPSS APSSLYTPAS TVASFGTIQT  240
INMPFFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.14e-73LBD family protein