PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162876.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 522aa MW: 55273.5 Da PI: 7.225

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94	1.1e-29	278	336	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+ gCpv+k+v+r+aed +++++tYeg+H h+ XP_019162876.1 278 TDGCQWRKYGQKMAKGNPCPRGYYRCTMVaGCPVRKQVQRCAEDRTILITTYEGNHSHP 336 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MAKARGGLPF HPDPISADNH HSFRQPHPLP SPMDSPVNNS PPTLHFPVDV PCTADHHNDH 60 RKRTHVLGEV DFFADKDDDR ASGAAVPTAA AAADLDFNVN IGLHLHTTNA TGGRSIVEDG 120 LSPNSQDNRA KNEVGVIKAE LDRMNAENQH LRDMLNQVTN NYSALQTHLT SLMQQQKPLR 180 PFMGLGAEAA EDASQSSSEG RSGGGEPPRS PVNNNVESMS GENIYSLEKG SSSSNVKVAK 240 TTGQGSKSSS GNVDQATEAT IRKARVSVRA RSEAAMITDG CQWRKYGQKM AKGNPCPRGY 300 YRCTMVAGCP VRKQVQRCAE DRTILITTYE GNHSHPLPPA AMAMASTTSS AARMLLSGSM 360 PSADGASVAA LMNNSNFLAR AFLPAGMATI SASAPFPTVT LDLTQTQTQT PTPNPLHFPR 420 IPPNHSHNNQ AALLPLFGQP LSNQTKFSGL HLSHGLENQA MHQQNPAELA VTVNALTSDP 480 NFPAALAAAI ASILGGSDNT AASNAATLGN DNAGSVTMET TK

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MAKARGGLPF HPDPISADNH HSFRQPHPLP SPMDSPVNNS PPTLHFPVDV PCTADHHNDH  60
RKRTHVLGEV DFFADKDDDR ASGAAVPTAA AAADLDFNVN IGLHLHTTNA TGGRSIVEDG  120
LSPNSQDNRA KNEVGVIKAE LDRMNAENQH LRDMLNQVTN NYSALQTHLT SLMQQQKPLR  180
PFMGLGAEAA EDASQSSSEG RSGGGEPPRS PVNNNVESMS GENIYSLEKG SSSSNVKVAK  240
TTGQGSKSSS GNVDQATEAT IRKARVSVRA RSEAAMITDG CQWRKYGQKM AKGNPCPRGY  300
YRCTMVAGCP VRKQVQRCAE DRTILITTYE GNHSHPLPPA AMAMASTTSS AARMLLSGSM  360
PSADGASVAA LMNNSNFLAR AFLPAGMATI SASAPFPTVT LDLTQTQTQT PTPNPLHFPR  420
IPPNHSHNNQ AALLPLFGQP LSNQTKFSGL HLSHGLENQA MHQQNPAELA VTVNALTSDP  480
NFPAALAAAI ASILGGSDNT AASNAATLGN DNAGSVTMET TK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	9e-80	WRKY family protein