PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162906.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 371aa MW: 43020.8 Da PI: 7.9779

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162906.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.1	3.9e-07	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg sF+ + +Lk+H+++H XP_019162906.1 62 HTCEECGASFRKPAHLKQHMQSH 84 79*******************99 PP
2	zf-C2H2	21	9e-07	90	114	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ sF+rk++L+rH+ H XP_019162906.1 90 FTCPvdDCKSSFRRKDHLTRHLLQH 114 89*******************9887 PP
3	zf-C2H2	15.9	3.6e-05	119	144	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C++ Fs +sn+krH + H XP_019162906.1 119 FECPveCCSRKFSVQSNMKRHVKEmH 144 89********************9988 PP
4	zf-C2H2	18.6	5e-06	158	182	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ s L+ H +H XP_019162906.1 158 YVCSedGCGKVFKYASKLRAHEDSH 182 99*******************9888 PP
5	zf-C2H2	14.2	0.00013	249	273	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C +F ++snL++H + H XP_019162906.1 249 KCDfeGCEHTFATRSNLNQHVKAfH 273 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MDEGDQNRPV IFKDIRRYYC EFCGICRSKK ALISSHVLAH HQDELKAKGE SDESKEEGPK 60 MHTCEECGAS FRKPAHLKQH MQSHSLERPF TCPVDDCKSS FRRKDHLTRH LLQHQGKLFE 120 CPVECCSRKF SVQSNMKRHV KEMHDQCDSS HIDSPKQYVC SEDGCGKVFK YASKLRAHED 180 SHVKLETVEA ICTEPGCLKY FTNQQCLKEH IQSCHQHIVC EICGTKQLKK NMKRHLRMHE 240 AQPSSERIKC DFEGCEHTFA TRSNLNQHVK AFHLELKPFA CSISGCGMRF SFKHVRDNHE 300 KSGCHLYTQG DFEESDEQFR SRERGGRKRK LPVFETLMRK RILPPRDTDP IIEQGADYLS 360 WMLSAGSEDE S

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MDEGDQNRPV IFKDIRRYYC EFCGICRSKK ALISSHVLAH HQDELKAKGE SDESKEEGPK  60
MHTCEECGAS FRKPAHLKQH MQSHSLERPF TCPVDDCKSS FRRKDHLTRH LLQHQGKLFE  120
CPVECCSRKF SVQSNMKRHV KEMHDQCDSS HIDSPKQYVC SEDGCGKVFK YASKLRAHED  180
SHVKLETVEA ICTEPGCLKY FTNQQCLKEH IQSCHQHIVC EICGTKQLKK NMKRHLRMHE  240
AQPSSERIKC DFEGCEHTFA TRSNLNQHVK AFHLELKPFA CSISGCGMRF SFKHVRDNHE  300
KSGCHLYTQG DFEESDEQFR SRERGGRKRK LPVFETLMRK RILPPRDTDP IIEQGADYLS  360
WMLSAGSEDE S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	234	LKKNMKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-140	C2H2 family protein