PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162939.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 247aa    MW: 28181.6 Da    PI: 8.484
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-054870123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_019162939.1 48 YTCNFCRREFRSAQALGGHMNVH 70
                    9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MEQTRYWVWP KPKLDLSSSY GGDSWEEQAF AEDAAGALGG CVWPPRSYTC NFCRREFRSA  60
QALGGHMNVH RRDRARLKHS PPSHNGDLSV PTTNNPRRPL LTQASTFLYN PSSDRRILAP  120
NLGSETCFHL RDDDGVNGET KKKKKNYSRI LEDLEKNINC DEDDERLRMS KSIRCRAEGE  180
YDMADLSGSF RKRRRIDDSL FGCDPKPCLV ERCGGGLRRP QPERIHSSIE QELDLELRLG  240
SSPPKVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195RKRRR
2192196KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-28C2H2 family protein