PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019163016.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 185aa    MW: 20033.8 Da    PI: 7.3019
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019163016.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.13.5e-4471061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPv+G+vg i+ lq+q++ql+ +la
  XP_019163016.1   7 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMLQELPVNQRADAVSSLVYEANARMRDPVHGCVGAISYLQNQVSQLQMQLA 101
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_019163016.1 102 VAQAE 106
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MGGGSSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNISK MLQELPVNQR  60
ADAVSSLVYE ANARMRDPVH GCVGAISYLQ NQVSQLQMQL AVAQAEILCI QMQQQQQQEP  120
AAILPPQLYG DDKSSLLMST SAAAFTSNLD SLQQLQYQLA GFTSSSNAAA AAAAQDPLKR  180
ESLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.18e-70LBD family protein