PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163063.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 756aa MW: 85611.8 Da PI: 8.399

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.9	4.4e-20	69	166	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY +YA+++GFsvr ++ k+ g+it+r +vC++eg +++ + + ++++rr+r+++r++C+ak+ +kk++ g+++v+ +++eH+ XP_019163063.1 69 FYMTYARTCGFSVRHTSLKRG-LGGQITTRYLVCNREGVKRTGRPQpspvvgsgsgKSTQRRKRVSNRVQCNAKICLKKDTGGEFVVSVFVEEHT 162 9*************99987.8999*********999888899***9999********************************** PP FAR1 87 Hela 90 H+++ XP_019163063.1 163 HSMC 166 *997 PP

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence
MSIETVLPPA LPTGDVAEAS LTPEANVTDG GSNDMYTTVP VRYWWPTVDR AVTPFVGRRF 60 RTLAEGVHFY MTYARTCGFS VRHTSLKRGL GGQITTRYLV CNREGVKRTG RPQPSPVVGS 120 GSGKSTQRRK RVSNRVQCNA KICLKKDTGG EFVVSVFVEE HTHSMCFEPS RLFMRINRKL 180 DVAQQAFLAN CVKANVGGSK SFRLCKEAAG SFADVGATEM EFHNFKRDLQ QYVDAKDGEM 240 IIAKFRQKRE VCEEFYFDYH LDDEAHLARL FWADHTCRLS FTSFGDMISF DATYGTNRYD 300 LVFVPFTGVD SHKRCITFGA ALITREDTES YVWVLDRFKD AMGKSPMCVV TDQDPTMKSA 360 IARVLPETRH RYCMWHIMTK VSEKLGSTLA QNETFRNKLN DIVWGETITI GEFEAQWHLL 420 MEENNLTGHR WFCKLYAERE FWIPAYFLDL PMGGLLRTTS RSEATNNVYG KSTRPYCSVV 480 EFYMQYESVL ETQRHTQDKL NSESEGSLPE FKTPLAIERH LAQVFTLRIF YELQKEIESA 540 CFYCGVVGIR EDNGLVHYDI KGSYSVTHTV EFNPTVVSAS CSCKLFERLG LVCEHMFSVF 600 RAAQVKSLPP ECITPRWCKH TRLSCYCAKR SDCPSVDHAP NRLWTEIHSC LAIIGSNTTR 660 QTRMLQVIQD LTSEFLCDGM GDDHAKGNRG AIAALCGVEP PTTITIKPPA QAKNKGTAKR 720 IKSQRELAIE RSAKKGRKCG VCGEYARHNA RSCPLK

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence

MSIETVLPPA LPTGDVAEAS LTPEANVTDG GSNDMYTTVP VRYWWPTVDR AVTPFVGRRF  60
RTLAEGVHFY MTYARTCGFS VRHTSLKRGL GGQITTRYLV CNREGVKRTG RPQPSPVVGS  120
GSGKSTQRRK RVSNRVQCNA KICLKKDTGG EFVVSVFVEE HTHSMCFEPS RLFMRINRKL  180
DVAQQAFLAN CVKANVGGSK SFRLCKEAAG SFADVGATEM EFHNFKRDLQ QYVDAKDGEM  240
IIAKFRQKRE VCEEFYFDYH LDDEAHLARL FWADHTCRLS FTSFGDMISF DATYGTNRYD  300
LVFVPFTGVD SHKRCITFGA ALITREDTES YVWVLDRFKD AMGKSPMCVV TDQDPTMKSA  360
IARVLPETRH RYCMWHIMTK VSEKLGSTLA QNETFRNKLN DIVWGETITI GEFEAQWHLL  420
MEENNLTGHR WFCKLYAERE FWIPAYFLDL PMGGLLRTTS RSEATNNVYG KSTRPYCSVV  480
EFYMQYESVL ETQRHTQDKL NSESEGSLPE FKTPLAIERH LAQVFTLRIF YELQKEIESA  540
CFYCGVVGIR EDNGLVHYDI KGSYSVTHTV EFNPTVVSAS CSCKLFERLG LVCEHMFSVF  600
RAAQVKSLPP ECITPRWCKH TRLSCYCAKR SDCPSVDHAP NRLWTEIHSC LAIIGSNTTR  660
QTRMLQVIQD LTSEFLCDGM GDDHAKGNRG AIAALCGVEP PTTITIKPPA QAKNKGTAKR  720
IKSQRELAIE RSAKKGRKCG VCGEYARHNA RSCPLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-81	FAR1 family protein