PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163164.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 198aa MW: 22988.3 Da PI: 10.2732

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.7	1.4e-27	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien s rqvtfskRrng+lKKA+ELSvLCda+va++ifs+tgk y + XP_019163164.1 9 KRIENPSSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPTGKSYHF 57 79*******************************************9988 PP
2	K-box	61.8	2.6e-21	84	171	12	99
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ ++e++ +k+ +e+L++ +h+ Ged++ L ++eL+qLe+qL ++++iRskK +++ e+i+ l++k k l+een L+k+++ XP_019163164.1 84 RQTQVGRNEIEDMKRTVESLEERDKHFAGEDISMLGMRELKQLERQLRIGVERIRSKKRRMISENINWLKRKHKLLKEENIHLQKQVK 171 56778899*****************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MGRGKVELKR IENPSSRQVT FSKRRNGLLK KAYELSVLCD AQVALLIFSP TGKSYHFGSH 60 DIDGTIARYK REVGLSISNE RGLRQTQVGR NEIEDMKRTV ESLEERDKHF AGEDISMLGM 120 RELKQLERQL RIGVERIRSK KRRMISENIN WLKRKHKLLK EENIHLQKQV KMHEHQETGS 180 NGNSNPILLD PEADEMVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	7e-49	MIKC_MADS family protein