PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163165.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 185aa MW: 21363.4 Da PI: 10.0973

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.8	1.2e-27	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien s rqvtfskRrng+lKKA+ELSvLCda+va++ifs+tgk y + XP_019163165.1 9 KRIENPSSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPTGKSYHF 57 79*******************************************9988 PP
2	K-box	57.6	5.6e-20	85	164	12	91
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 ++++ ++e++ +k+ +e+L++ +h+ Ged++ L ++eL+qLe+qL ++++iRskK +++ e+i+ l++k k++++++ XP_019163165.1 85 RQTQVGRNEIEDMKRTVESLEERDKHFAGEDISMLGMRELKQLERQLRIGVERIRSKKRRMISENINWLKRKVKMHEHQE 164 56778899*****************************************************************9998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MGRGKVELKR IENPSSRQVT FSKRRNGLLK KAYELSVLCD AQVALLIFSP TGKSYHFGSH 60 DDIDGTIARY KREVGLSISN ERGLRQTQVG RNEIEDMKRT VESLEERDKH FAGEDISMLG 120 MRELKQLERQ LRIGVERIRS KKRRMISENI NWLKRKVKMH EHQETGSNGN SNPILLDPEA 180 DEMVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	7e-46	MIKC_MADS family protein