PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163166.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 256aa MW: 29375.8 Da PI: 7.1169

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.3e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd ll+++++++G g+W++ a+t g++R++k+c++rw +yl XP_019163166.1 16 RGPWTEEEDGLLIHYIALHGQGRWNLLAKTAGLRRSGKSCRLRWVNYL 63 89********************************************97 PP
2	Myb_DNA-binding	51.9	1.7e-16	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ +lG++ W++Ia++++ gRt++++k++w++ XP_019163166.1 69 RGNLTLEEQLLILELHLKLGNR-WSKIAEHLP-GRTDNEIKNYWRT 112 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MQLSSQSSTS DDDLRRGPWT EEEDGLLIHY IALHGQGRWN LLAKTAGLRR SGKSCRLRWV 60 NYLKPDVKRG NLTLEEQLLI LELHLKLGNR WSKIAEHLPG RTDNEIKNYW RTRVQKQARN 120 LNLHSNTAAF QQLIRHFWVP TLLHKIHARS IQPQPQTTTS YQEKKPHYNS SHQPLTNSNT 180 TTESTYFSPL SPLSDECPSI NNPFHGYYGM EAFSPPLFTG SGDCFIDYDQ VGEGNSSMDD 240 FSVDSSLWSM DEIWVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25340.1	9e-59	MYB family protein