PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019163425.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 183aa    MW: 20483.1 Da    PI: 6.5875
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019163425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY191.73.4e-5971624170
           YABBY   4 fssseqvCyvqCnfCntilavsvPs.tslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                     +ss+++vCyv+C+fCntilavsvP  +s++++v vrCGhC++llsv++    +  + ++         +++e+++ e+++ s  +++++++ sv 
  XP_019163425.1   7 TSSADRVCYVNCSFCNTILAVSVPCiSSMLNTVVVRCGHCSNLLSVDVGALLHPFPLQDF--------QQQEQHQFEDAMGSVPSNYNCNMFSVF 93 
                     5789********************637899**************************9995........445555556666666666666666655 PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         s+++  e +   p +r  ekrqr+Psaynrfikeei+rik++nP+ish+eafsaaaknWahfP+ hfgl
  XP_019163425.1  94 E---SHDQLLEQSILTP-MRTLEKRQRAPSAYNRFIKEEIHRIKSNNPKISHKEAFSAAAKNWAHFPHTHFGL 162
                     5...4455555554445.899**************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MSLDITTSSA DRVCYVNCSF CNTILAVSVP CISSMLNTVV VRCGHCSNLL SVDVGALLHP  60
FPLQDFQQQE QHQFEDAMGS VPSNYNCNMF SVFESHDQLL EQSILTPMRT LEKRQRAPSA  120
YNRFIKEEIH RIKSNNPKIS HKEAFSAAAK NWAHFPHTHF GLNLVGNRQA NVDDAVGDQD  180
ATQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-53YABBY family protein