PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163469.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 364aa MW: 41832.3 Da PI: 8.1283

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	2.9e-21	47	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+ +GF+vrks+ k+ r g i k+++vC++eg+++ + ++ t++++r+r+++r+gC ak++ +++++g+++v+k+e+ H H l+ XP_019163469.1 47 YYKTYASVTGFDVRKSSDIKN-RYGIILKKKLVCNREGYKDAKPNTttdqnnTTQTKRRRPSNRVGCMAKIVFRRNSTGRYVVKKFEEGHAHCLC 140 8**************9998.7888**********999998899999999999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MEEGGKSQHC VMDESQDGTS IWFTECDPAI KPVVDQVFDT LEDGIAYYKT YASVTGFDVR 60 KSSDIKNRYG IILKKKLVCN REGYKDAKPN TTTDQNNTTQ TKRRRPSNRV GCMAKIVFRR 120 NSTGRYVVKK FEEGHAHCLC EESYKPFLKG NRKVDIGHQQ FIVNCSKVNI GASKSHDLYA 180 EMVGGVENVG ATQQDFKNYR REILAYMQGG DAQMVISKYL DLKSDYDDMY FEYEANENDQ 240 LARVFWADGM ARKQYSVFGD VVSFDATYKT NRYNLVFVPF TGIDHHKRCV TFAAALIARE 300 DVDSYRWILK NFRNAMGSTP PLTITDQDPA MKVAIAQEFP ETRHRYCMWH IMSKVTDKLD 360 YPQT

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MEEGGKSQHC VMDESQDGTS IWFTECDPAI KPVVDQVFDT LEDGIAYYKT YASVTGFDVR  60
KSSDIKNRYG IILKKKLVCN REGYKDAKPN TTTDQNNTTQ TKRRRPSNRV GCMAKIVFRR  120
NSTGRYVVKK FEEGHAHCLC EESYKPFLKG NRKVDIGHQQ FIVNCSKVNI GASKSHDLYA  180
EMVGGVENVG ATQQDFKNYR REILAYMQGG DAQMVISKYL DLKSDYDDMY FEYEANENDQ  240
LARVFWADGM ARKQYSVFGD VVSFDATYKT NRYNLVFVPF TGIDHHKRCV TFAAALIARE  300
DVDSYRWILK NFRNAMGSTP PLTITDQDPA MKVAIAQEFP ETRHRYCMWH IMSKVTDKLD  360
YPQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-55	FAR1 family protein