PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163561.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

YABBY

Protein Properties

Length: 214aa MW: 24374.3 Da PI: 6.3656

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	197.1	7.5e-61	4	173	3	167
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas......qllaaeshldeslkeelleelkveeenlksnvekees 91 +f+ +q+Cyv+C++C+til+vsvP +sl +vvtvrCGhCt +lsvn+++++ l a+ +h +++ k+e + eee+ ++ +++++ XP_019163561.1 4 LFNLQDQLCYVKCGHCTTILLVSVPRSSLCTVVTVRCGHCTAILSVNMMVRTslvpfhLLAASLDHHHHQWKQEG----EEEEEEEQEGDSNNNP 94 57889******************************************99944554222233444333333332....2222223333333333 PP YABBY 92 astsvssekl.senedeevpr.vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf.Pkih 167 + +++s l +e++++++p + v +PPekrqr+Psayn+fikeei+r+kasnP +sh++afsaa+knWah+ P h XP_019163561.1 95 KPWEKNSPFLeEEDNNDDSPVtQTAVTKPPEKRQRAPSAYNCFIKEEIKRLKASNPCMSHKQAFSAASKNWAHLrPSQH 173 33333444442233333333303559*********************************************955555 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MNPLFNLQDQ LCYVKCGHCT TILLVSVPRS SLCTVVTVRC GHCTAILSVN MMVRTSLVPF 60 HLLAASLDHH HHQWKQEGEE EEEEEQEGDS NNNPKPWEKN SPFLEEEDNN DDSPVTQTAV 120 TKPPEKRQRA PSAYNCFIKE EIKRLKASNP CMSHKQAFSA ASKNWAHLRP SQHHESEGGS 180 YDQEEINVQS MYSGTEQSSK FHIEFKIKIR LNPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	4e-50	YABBY family protein