PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019163676.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 153aa    MW: 17214.4 Da    PI: 6.6191
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019163676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY141.21.2e-43213229170
           YABBY  29 tslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrq 123
                     +s++++v vrCG C++llsv+l    +  + ++        +++e++++e+    s   ++++++ sv     s+++  e +   p +r  ekrq
  XP_019163676.1   2 SSMLNTVVVRCGQCSNLLSVDLGALPHPFPLQDF-------QQQEQHQFEDAMAGSVPFNYNCNMFSVFE---SHDQLLEQSILTP-MRTLEKRQ 85 
                     79****************************9996.......45566667777777777777777776666...4455555554455.89****** PP

           YABBY 124 rvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     r+Psaynrfikeei+rikasnP+ish+eafsaaaknWahfP  h gl
  XP_019163676.1  86 RAPSAYNRFIKEEIHRIKASNPKISHKEAFSAAAKNWAHFPLTHCGL 132
                     ********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MSSMLNTVVV RCGQCSNLLS VDLGALPHPF PLQDFQQQEQ HQFEDAMAGS VPFNYNCNMF  60
SVFESHDQLL EQSILTPMRT LEKRQRAPSA YNRFIKEEIH RIKASNPKIS HKEAFSAAAK  120
NWAHFPLTHC GLNLVGNRQA NVDDAVGDQD ATQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.15e-35YABBY family protein