PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163813.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 359aa MW: 38954 Da PI: 6.5062

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.6	8.1e-15	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ +ar g+ R++k+c++rw +yl XP_019163813.1 39 KGLWSPEEDEKLMHYMLSNGQGCWSEVARNAGLQRCGKSCRLRWINYL 86 678*******************************************97 PP
2	Myb_DNA-binding	52.7	9.7e-17	92	136	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++ XP_019163813.1 92 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNST 136 89******************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MRKPEFSSGK NGANVGNSNM NSSSDGGGGG NNVGAKLRKG LWSPEEDEKL MHYMLSNGQG 60 CWSEVARNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIIHLHSLL GNRWSQIAAR 120 LPGRTDNEIK NFWNSTLKKR MKNSSSSPST TSPNTSDNNS SSLEPCRDNN IMGALISSSS 180 MPQDHHHHHN NGGAAALMSS MYMHDPSSSS SSFSSSLPLT TAADPLPMLG HSFSAAAASF 240 METGHALGGG GAYYGDHHGI FGGNIGAEEG PPPNHLFMVP PLESVNNVEC HVVKSEGFVN 300 NNNNINTNIN NHFMNNNNVK VENVGGGFGS YWDNGGEWDL EELMKDVPNS FPFLDFQLE

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MRKPEFSSGK NGANVGNSNM NSSSDGGGGG NNVGAKLRKG LWSPEEDEKL MHYMLSNGQG  60
CWSEVARNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIIHLHSLL GNRWSQIAAR  120
LPGRTDNEIK NFWNSTLKKR MKNSSSSPST TSPNTSDNNS SSLEPCRDNN IMGALISSSS  180
MPQDHHHHHN NGGAAALMSS MYMHDPSSSS SSFSSSLPLT TAADPLPMLG HSFSAAAASF  240
METGHALGGG GAYYGDHHGI FGGNIGAEEG PPPNHLFMVP PLESVNNVEC HVVKSEGFVN  300
NNNNINTNIN NHFMNNNNVK VENVGGGFGS YWDNGGEWDL EELMKDVPNS FPFLDFQLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	1e-58	MYB family protein