PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164306.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 157aa    MW: 17771.2 Da    PI: 9.2169
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.12.1e-112593190
            FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                    ++f Csk g++ + ++    +  ++   rtgC a ++    +dg w vtk ++ HnHel+
  XP_019164306.1  2 KRFSCSKAGYKVKANTG--VKTYSKIDIRTGCGAFVQFDVGEDGLWTVTKHVKVHNHELC 59
                    79*********998877..8889999*********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MKRFSCSKAG YKVKANTGVK TYSKIDIRTG CGAFVQFDVG EDGLWTVTKH VKVHNHELCA  60
LDKSHLLRSH RRLGDNQLLY LKDLKKSSVA LADDIRFLKH QSGGSPLIGF TNRDAYNSLA  120
SDTLKRLDRT DSNSLMEIFG KRQSTESDFF FDFEVDC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-13FAR1 family protein