PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164322.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 331aa    MW: 37254.8 Da    PI: 6.2835
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164322.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.71.6e-05749440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    r C+ ++   + l+C+ ++  lC +C  e H+       Ht++
  XP_019164322.1  7 RLCDFCGYCTAVLYCTADSAKLCLSCDREVHSTnqlftkHTRS 49
                    78****9977*********************668888888875 PP
2zf-B_box22.42.5e-075093442
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +++ ++++fC  +   lC++C  e+H +      H+++p+
  XP_019164322.1 50 LLCDACDSSPASIFCSMDAAVLCHTCHWESH-SpalsppHDCCPV 93
                    57*****************************.5599999999886 PP
3CCT65.61.5e-22280324145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     Re a++RYkeKrktR+FeK+irYesRK++AesR R+KGrF+k+++
  XP_019164322.1 280 RETAITRYKEKRKTRRFEKQIRYESRKVRAESRARIKGRFAKKDQ 324
                     99****************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MLKERHRLCD FCGYCTAVLY CTADSAKLCL SCDREVHSTN QLFTKHTRSL LCDACDSSPA  60
SIFCSMDAAV LCHTCHWESH SPALSPPHDC CPVEQFSGRP SLNELLFVLG FENVSKKSLL  120
SGDDADNDEY LDYLVWDTPS GVDDYDVPLP KNQNAACGQH KADILCQLRD MLKLEPNFAT  180
EDEDFEPMRS FQSMEPKSTE LKQKASGFQT SKFVEQGIAS SLFGGFVETN CLVPDKDSDT  240
GDGSVLANDH SKGQSQHSSI TDTMQVLPRV APRELNSQER ETAITRYKEK RKTRRFEKQI  300
RYESRKVRAE SRARIKGRFA KKDQRDTAIH G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.19e-69CO-like family protein