PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164429.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 735aa MW: 83992 Da PI: 8.2298

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.4	2.6e-19	64	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY +YA +vGF++r s+ + r+g+ t++ C++eg++++ ++ ++ +r+r+++rtgC+a+++ k + ++vt++ + XP_019164429.1 64 EFYTRYAAKVGFDTRSSSVVTA-RDGTKTQKLILCNREGFKNTGAQHcqsqssadagegPSRPKRRRVSNRTGCRARIMFKYIGAAGYQVTTFIE 157 6************9998887.88889**********999999999*999889999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019164429.1 158 KHNHNMS 164 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MEEFDRVPID IQSTNNPCLS PSSSSNGHTL TISPGMTQYW TPHCEDEIRP AVDMIFKTLD 60 AGIEFYTRYA AKVGFDTRSS SVVTARDGTK TQKLILCNRE GFKNTGAQHC QSQSSADAGE 120 GPSRPKRRRV SNRTGCRARI MFKYIGAAGY QVTTFIEKHN HNMSSVLARQ FLKGNRNISS 180 VHQKFILDCA KANIGASKSH GLYSHIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILV 240 HNLIKKQEMC PAFAFDYEVD EDEQMNRLFW ADPMSKKNFV AFGDVVSFDA TYSTNRYDLV 300 LTPFTGVDNH KKCITFGAGL LLEEDIESYV WLFEKFKKAM GMEPRIIVTD QDPAMKVAIP 360 TVFKQARHRY CMWHIMCKVG EKVGPTLNKD EEFRNKLNSI VWTSSLEPPD FEMQWRELME 420 KYNLVEHNWF KTMFEARKHW IPAYFRDVFM GGLLRTTSRS ESENYAYSRF SGPQSSLVEF 480 MMNFDSALRS QRNTNAKLNS DNEGYNPDMK TPLGIEKHAS IVYTITVFYQ VQEEICASCF 540 KCMVLSVRED GGMLHYDIMD GKNKRFTVVH NVNDHEAKCS CKMFEMVGLL CRHIFVVFRD 600 LERIPLKYVV NRWTKDASLK ATFEIDGVIY DQNGPKDEKK MLLNKVWSDI HCCMDLAGSN 660 MEQLTAFSKV IDEQKQLLLS GKEKLSPQHS RRTVIESYCG STEISEINIL PPKHAKNKGS 720 GNRIKSSKEL AMEKQ

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MEEFDRVPID IQSTNNPCLS PSSSSNGHTL TISPGMTQYW TPHCEDEIRP AVDMIFKTLD  60
AGIEFYTRYA AKVGFDTRSS SVVTARDGTK TQKLILCNRE GFKNTGAQHC QSQSSADAGE  120
GPSRPKRRRV SNRTGCRARI MFKYIGAAGY QVTTFIEKHN HNMSSVLARQ FLKGNRNISS  180
VHQKFILDCA KANIGASKSH GLYSHIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILV  240
HNLIKKQEMC PAFAFDYEVD EDEQMNRLFW ADPMSKKNFV AFGDVVSFDA TYSTNRYDLV  300
LTPFTGVDNH KKCITFGAGL LLEEDIESYV WLFEKFKKAM GMEPRIIVTD QDPAMKVAIP  360
TVFKQARHRY CMWHIMCKVG EKVGPTLNKD EEFRNKLNSI VWTSSLEPPD FEMQWRELME  420
KYNLVEHNWF KTMFEARKHW IPAYFRDVFM GGLLRTTSRS ESENYAYSRF SGPQSSLVEF  480
MMNFDSALRS QRNTNAKLNS DNEGYNPDMK TPLGIEKHAS IVYTITVFYQ VQEEICASCF  540
KCMVLSVRED GGMLHYDIMD GKNKRFTVVH NVNDHEAKCS CKMFEMVGLL CRHIFVVFRD  600
LERIPLKYVV NRWTKDASLK ATFEIDGVIY DQNGPKDEKK MLLNKVWSDI HCCMDLAGSN  660
MEQLTAFSKV IDEQKQLLLS GKEKLSPQHS RRTVIESYCG STEISEINIL PPKHAKNKGS  720
GNRIKSSKEL AMEKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-101	FAR1 family protein