PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164507.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 116aa    MW: 12889.6 Da    PI: 4.336
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF435.6e-141054750
                    HHHHHHHHHHHHHHHHHHHHHHHH.HT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvL.Cdaevaviifsstgklyeys 50
                    + r+v f+kRr+ ++KKA EL vL  ++++a ++fs+ g+ly ++
  XP_019164507.1 10 RARNVCFTKRRKRLFKKAAELGVLfPEVRIAAVVFSPAGNLYVFC 54
                    5699********************559***************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    
MGLSSANKGR ARNVCFTKRR KRLFKKAAEL GVLFPEVRIA AVVFSPAGNL YVFCDVSEME  60
KLLAMDEPSA LLTEETENGE EENAHSSPVV EITLQEITGD FDGLDEEGFI NQFLNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.21e-09MIKC_MADS family protein