PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164632.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 204aa    MW: 23477.3 Da    PI: 4.6699
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.6e-09650244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       WT +E+ ++  a   +  g   +Wk+Ia+ +  g+++k++ +++
   XP_019164632.1  6 ATWTWDEERIFESALLTYVEGtpkRWKKIAKLIS-GKSAKDVEEHY 50
                     57****************99999***********.**********8 PP
2Myb_DNA-binding27.76.4e-09100145144
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      r  WT +E+ ++  a   +  g   +Wk+Ia+ +  g+++k++ +++
   XP_019164632.1 100 RTTWTWDEERIFESALLTYVEGtpkRWKKIAKLIS-GKSAKDVEEHY 145
                      678****************99999***********.**********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MANQRATWTW DEERIFESAL LTYVEGTPKR WKKIAKLISG KSAKDVEEHY PILLAKIEAM  60
ESNITQLQTN TNDASSSQRI EEKEVGSVWD LDELVSCSER TTWTWDEERI FESALLTYVE  120
GTPKRWKKIA KLISGKSAKD VEEHYPILLA KIEAMESNIT QLQTNTNDAS SSQQRREEKE  180
VGSVWDLDEL VSCSEVYHAL NKYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-12MYB_related family protein