PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164679.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 443aa MW: 48146.8 Da PI: 5.8055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.5e-09	259	307	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_019164679.1 259 NSHSLAERVRREKISERMKFLQDLVPGC----NKVIGKAVMLDEIINYVQSLQ 307 58***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MDHMDEFEAE RRADDDDGGV NLFNSSNMNT ANLGMDSFCS AIWDQPNPVN HLVLGLGDAN 60 NVEFEPSRIS GGNGSFGVPP NGMLKGSTLL PPAVPGLLPP PRFLPHFQVD SDFVERAARF 120 SCFGGGNVMN PFNTLECINA HSKGLAPPPQ TQRPREALVG NGLKNESLPI GHNFAEEAKE 180 RAGVSEAESD GLECLSESAV GQSSAKGLGS KKRKRRGQGA ELDQNKREPG NDDKQGSQTS 240 DTPKDEYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCNKVI GKAVMLDEII 300 NYVQSLQRQV EFLSMKLATI NPGLDFNSDV VFTKEISRAA SSSSSLAFPP DMAMPYPPIH 360 SPQPMLIQGG LPGLENSTVA LHRTINSQLP NTSETNKDHP TSKVSNTWSE FHNVFQMGFN 420 STAPLSSQFT SSLPPPDLTK TEP

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MDHMDEFEAE RRADDDDGGV NLFNSSNMNT ANLGMDSFCS AIWDQPNPVN HLVLGLGDAN  60
NVEFEPSRIS GGNGSFGVPP NGMLKGSTLL PPAVPGLLPP PRFLPHFQVD SDFVERAARF  120
SCFGGGNVMN PFNTLECINA HSKGLAPPPQ TQRPREALVG NGLKNESLPI GHNFAEEAKE  180
RAGVSEAESD GLECLSESAV GQSSAKGLGS KKRKRRGQGA ELDQNKREPG NDDKQGSQTS  240
DTPKDEYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCNKVI GKAVMLDEII  300
NYVQSLQRQV EFLSMKLATI NPGLDFNSDV VFTKEISRAA SSSSSLAFPP DMAMPYPPIH  360
SPQPMLIQGG LPGLENSTVA LHRTINSQLP NTSETNKDHP TSKVSNTWSE FHNVFQMGFN  420
STAPLSSQFT SSLPPPDLTK TEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	216	KKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	7e-64	bHLH family protein