PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164697.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 411aa MW: 46622.1 Da PI: 6.6748

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.2	8.2e-09	18	61	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC++C + H+ H++v XP_019164697.1 18 ARACDSCIRRRARWYCAADDAFLCQSCDYSVHNAnllarrHERV 61 578*****************************768888889876 PP
2	CCT	65.5	1.5e-22	354	397	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_019164697.1 354 REARVSRYREKRRKRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 397 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MVSSSDRKLA SAVGAKTARA CDSCIRRRAR WYCAADDAFL CQSCDYSVHN ANLLARRHER 60 VRLKSSDLKT PDEFPSLESL ARSWPHGFTR KARTPRGRKH AKPKSDQSFT KHPLLLVPEI 120 YSDENSHNDE SDEQLLYRVP VFDGFAAEMC TSGRANEAAG ENIPDVRTNI PASLDFRHNK 180 DDSNKPPGIV PSEFELGEIE SLLGKGLDDE SFNMEELGLF SNFNKVKVET DEEAAIANHN 240 VALKFDNCDD NSPVAMCDGE YDDRGGELAT ILQQSDDFDY KTEKNKILLK LDYEGVITAW 300 ADQRSPWTNG ERPDLDSNDC WPDFTDGWGT IHNNPYGEMG SMSIGHAAIM DEGREARVSR 360 YREKRRKRLF SKKIRYEVRK LNAEKRPRMK GRFVKRANFV APLSNFPLIT K

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MVSSSDRKLA SAVGAKTARA CDSCIRRRAR WYCAADDAFL CQSCDYSVHN ANLLARRHER  60
VRLKSSDLKT PDEFPSLESL ARSWPHGFTR KARTPRGRKH AKPKSDQSFT KHPLLLVPEI  120
YSDENSHNDE SDEQLLYRVP VFDGFAAEMC TSGRANEAAG ENIPDVRTNI PASLDFRHNK  180
DDSNKPPGIV PSEFELGEIE SLLGKGLDDE SFNMEELGLF SNFNKVKVET DEEAAIANHN  240
VALKFDNCDD NSPVAMCDGE YDDRGGELAT ILQQSDDFDY KTEKNKILLK LDYEGVITAW  300
ADQRSPWTNG ERPDLDSNDC WPDFTDGWGT IHNNPYGEMG SMSIGHAAIM DEGREARVSR  360
YREKRRKRLF SKKIRYEVRK LNAEKRPRMK GRFVKRANFV APLSNFPLIT K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	381	RRKRLFSKKIRYEVRKL
2	366	382	RRKRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	4e-78	CO-like family protein