PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164726.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 301aa MW: 33850.6 Da PI: 6.3743

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164726.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.9e-18	85	138	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_019164726.1 85 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 138 456899***********************************************9 PP
2	HD-ZIP_I/II	131.9	2.4e-42	84	176	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++da+k+en++L++++++L++e+++ XP_019164726.1 84 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKRQFDAIKSENDALQAQNQKLHAEIMA 176 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MSTCIEMAFF PTNFMLQTPH EDDHQPSTSL NPLLPSCTPQ DFHGVASFLG KRSMSFSGVE 60 TGNCEEGGHG GEDDLSDDGS QAGEKKRRLN MEQVKTLEKN FELGNKLEPE RKMQLARALG 120 LQPRQIAIWF QNRRARWKTK QLEKDYEVLK RQFDAIKSEN DALQAQNQKL HAEIMALKNS 180 RDHQPTESIN LNKETEGSCS NRSENSSEIK LDISRTTATA IDSHPPLTGN GSRSLFPPNT 240 MRPAGMPHHL FHSNPSSSSR PPSSSSDLHP QSVKEETLST MFCGIDDQSG FWPWLEQQHF 300 N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-118	HD-ZIP family protein