PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164912.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Whirly
Protein Properties Length: 280aa    MW: 30881.9 Da    PI: 9.1217
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly215.17e-671022401139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s+yk+kaal+v + +p+f+ ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sceffhdp +++s+eGkvrk+lk
  XP_019164912.1 102 SIYKGKAALTVVPCAPEFSPLDSGAFKLSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTELGSLISLGAKDSCEFFHDPNKGKSDEGKVRKVLK 196
                     7********************************************************************************************** PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     +ePlpdGsG+f+nlsv+n+l++++e++++Pvskaefavl s+++
  XP_019164912.1 197 IEPLPDGSGHFFNLSVQNKLINVDENIYIPVSKAEFAVLVSAFN 240
                     ****************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGTMLNPCLS SSSSPRGLHT QTPLFSHPFQ SLSSRSSLST LFKSSSLPAQ KPLQWRKLSL  60
ECRHSDYFEP HQQQNQWASP NNSSFSSQPA GTLPPKVFIG YSIYKGKAAL TVVPCAPEFS  120
PLDSGAFKLS KEGFVLLQFA PAAGVRQYDW GRKQVFSLSV TELGSLISLG AKDSCEFFHD  180
PNKGKSDEGK VRKVLKIEPL PDGSGHFFNL SVQNKLINVD ENIYIPVSKA EFAVLVSAFN  240
FVLPYLLGWH TFVSSVGPED ANYANNATNP RSGADFEWRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-111Whirly family protein