PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164970.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 256aa    MW: 29181.2 Da    PI: 5.2365
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.1e-1851104356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++ +eq++ Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa+ k
  XP_019164970.1  51 KKRRLAAEQVRFLERSFEVEKKLEPERKLQLANQLGLQPRQVAIWFQNRRARSK 104
                     5568999*********************************************99 PP
2HD-ZIP_I/II1283.9e-4150141192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl++eqv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR ktkq+Ekdy++Lk+++d+lk+++++L+k++++Lr+e+ 
  XP_019164970.1  50 EKKRRLAAEQVRFLERSFEVEKKLEPERKLQLANQLGLQPRQVAIWFQNRRARSKTKQIEKDYDSLKARFDKLKADHDSLSKQNQHLRNEVV 141
                     69**************************************************************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MDSDNNMSTV NTSVWISNTD PSVHEDCGEE MMKGGNCNEE SCEGCFYQAE KKRRLAAEQV  60
RFLERSFEVE KKLEPERKLQ LANQLGLQPR QVAIWFQNRR ARSKTKQIEK DYDSLKARFD  120
KLKADHDSLS KQNQHLRNEV VLLTDKLLIQ EQHEGNPKPE TYDATGPLKQ PSCSAGAKKG  180
ENFPMVVSNK HENGSSDSSH VLDSDFSQDN NEDDDSLSRS LFQPFLKLEH HGDGFQSSCN  240
LGFSLEDHTT SSWLWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107RRARSKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-41HD-ZIP family protein