PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164971.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 246aa MW: 28019 Da PI: 6.0482

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.8e-18	41	94	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +eq++ Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa+ k XP_019164971.1 41 KKRRLAAEQVRFLERSFEVEKKLEPERKLQLANQLGLQPRQVAIWFQNRRARSK 94 5568999*********************************************99 PP
2	HD-ZIP_I/II	128.1	3.6e-41	40	131	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR ktkq+Ekdy++Lk+++d+lk+++++L+k++++Lr+e+ XP_019164971.1 40 EKKRRLAAEQVRFLERSFEVEKKLEPERKLQLANQLGLQPRQVAIWFQNRRARSKTKQIEKDYDSLKARFDKLKADHDSLSKQNQHLRNEVV 131 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MDSDNNMSTV NTSVWISNTD PSVHEDCGEE MMKGGNCKAE KKRRLAAEQV RFLERSFEVE 60 KKLEPERKLQ LANQLGLQPR QVAIWFQNRR ARSKTKQIEK DYDSLKARFD KLKADHDSLS 120 KQNQHLRNEV VLLTDKLLIQ EQHEGNPKPE TYDATGPLKQ PSCSAGAKKG ENFPMVVSNK 180 HENGSSDSSH VLDSDFSQDN NEDDDSLSRS LFQPFLKLEH HGDGFQSSCN LGFSLEDHTT 240 SSWLWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	97	RRARSKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	1e-40	HD-ZIP family protein