PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165055.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 241aa    MW: 26651.5 Da    PI: 6.4975
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.98.4e-39101101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +kll++lp  +r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
  XP_019165055.1  10 PCGACKFLRRKCVKGCVFAPYFCHEQgASHFAAIHKVFGASNASKLLSHLPVADRPEAAITISYEAQARLQDPIYGCVSHIFALQQQVINLRAQL 104
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     a+lke+
  XP_019165055.1 105 ASLKEQ 110
                     *99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MSSGSTSGSP CGACKFLRRK CVKGCVFAPY FCHEQGASHF AAIHKVFGAS NASKLLSHLP  60
VADRPEAAIT ISYEAQARLQ DPIYGCVSHI FALQQQVINL RAQLASLKEQ AAQTFCNSGN  120
PNYDKSWGRQ PCYYSQDVEG WLGSGTLESV PQFPNNNVGE MGFYSNGNLN HHHHNLNPIY  180
NQTSILPEEN MSSYATSFEE GSSSMDSLDI QTADNKPWPP AAYHDDRDDL QSVAFRYLQH  240
H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.16e-68LBD family protein