PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165075.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 171aa    MW: 18874.6 Da    PI: 9.4402
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165075.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.68.6e-3881091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                     +C aCk+lrrkC +dC++apyf  eq  ++kfa++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ l+a+
  XP_019165075.1   8 PCGACKFLRRKCGADCIFAPYFRWEQlgAAKFAAIHKVFGASNVSKLLSNVPVHDRYEAALTIAYEAQARIKDPVYGCVAHIFALQQQVAYLQAQ 102
                     7*********************9999667****************************************************************** PP

          DUF260  94 lallkee 100
                     l ++k e
  XP_019165075.1 103 LLQVKGE 109
                     9888765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MATGTGSPCG ACKFLRRKCG ADCIFAPYFR WEQLGAAKFA AIHKVFGASN VSKLLSNVPV  60
HDRYEAALTI AYEAQARIKD PVYGCVAHIF ALQQQVAYLQ AQLLQVKGEL AQRTLNVNSR  120
RGENDWVRGT GYAYNTEGDG FLEMMQSSSR KRASQSDLGE LQALASRMMK N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.14e-51LBD family protein