PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165082.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

RAV

Protein Properties

Length: 393aa MW: 43424.3 Da PI: 9.9377

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.9	1.2e-13	88	136	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g XP_019165082.1 88 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAAQRFRG 136 689*9788.8*****3.....5***********************98 PP
2	B3	102.2	2.9e-32	218	314	1	92
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae+h g ++++ l +ed++g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++ e+ XP_019165082.1 218 FEKAVTPSDVGKLNRLVIPKQHAEKHlpmqnAGAAPKGILLNFEDKTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDVVCFQRSAGPEK 312 89************************9996677899************************************************8765555 PP .. CS B3 91 el 92 +l XP_019165082.1 313 QL 314 44 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MRLLCHKTLN NIIFFSNLSL TPQISLKKMD RSSADESTTS DSISAAVPAK TMTKWPESGL 60 CRMGSGGSVI IDAENGVEAE STRKLPSSRF KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE 120 EEAARAYDVA AQRFRGREAV TNFKPLVLSS EEGRNDDVQI AFLNNHSKLE IVDMLRKHTY 180 GEEFGQFKAA FGQFGTRSLK DDNTLDKSNN SSTREPLFEK AVTPSDVGKL NRLVIPKQHA 240 EKHLPMQNAG AAPKGILLNF EDKTGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKSLKAGD 300 VVCFQRSAGP EKQLFIDCKT AAAAAAGSCF VQAQHRSPAA QVVRLFGVNI WKAAGDVNGN 360 AGEISSCGGV KRLREMDLLA VDGGKKQRVI DAL

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MRLLCHKTLN NIIFFSNLSL TPQISLKKMD RSSADESTTS DSISAAVPAK TMTKWPESGL  60
CRMGSGGSVI IDAENGVEAE STRKLPSSRF KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE  120
EEAARAYDVA AQRFRGREAV TNFKPLVLSS EEGRNDDVQI AFLNNHSKLE IVDMLRKHTY  180
GEEFGQFKAA FGQFGTRSLK DDNTLDKSNN SSTREPLFEK AVTPSDVGKL NRLVIPKQHA  240
EKHLPMQNAG AAPKGILLNF EDKTGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKSLKAGD  300
VVCFQRSAGP EKQLFIDCKT AAAAAAGSCF VQAQHRSPAA QVVRLFGVNI WKAAGDVNGN  360
AGEISSCGGV KRLREMDLLA VDGGKKQRVI DAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-132	RAV family protein