PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165142.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 654aa MW: 73590.4 Da PI: 8.1358

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	3e-21	66	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn YA++vGFsvrk +++++ +++i +++f C k g++++ ++ + ++ rtgC a ++ dg w vtk +eHnHel++ XP_019165142.1 66 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 153 7**************************************99887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MEEMTVRGED STDMISAIPV NEDCVGDSIS NDQAELNIDI DGSSSSPVDE DLVGVVVRNV 60 DEAFELYNGY AYRVGFSVRK GQQRYKASTK SIQMKRFFCA KAGYKQKPNS GVKLYSKIDM 120 RTGCGAFVQF DVGGDGMWTV TKHLKEHNHE LCSFGKSHLL RSHRRVGNNQ LEYLKDMKSS 180 GVALADGMRF LKHQSGGSPL VGFTNRDAYN SMASVSLKCL DGSDSNSLIE IFRRRQSNEA 240 DFFFDFETIM TDQCSAMAAG ISMVFPTSRH CLCIWHIGEN SKKHIKALRN HKDLLDMFNC 300 VLKYTETEAE FEVYWTRMVT KYSCHKNTWL EKLYDCREKW CPAFNKDYFS GGILSSQRSE 360 STNHAISRRL SKTAGLCDFY SSFVSVISEW RSKENGEDFR CSQGVPAMMM DHVKLLSHAR 420 ECKYHVWRPD IDIIRHEVTF KAINLDICCS CKLFSELGIL CCHCLRILHV HCVSSIPDKY 480 ILKRWTKKVV EGRNVDIASV FYNGGVPSSI WAVEISRKFQ RLIVSSQDNS VARQFCDEAV 540 ENARKNIEAE IGDVNTEEGA VSSSSGIVQD PSSRRGKGVR NKRSSSVIEK KYNAARGRKS 600 AANKLASITK GSVQSLVLEN ISEIARDGYL VHPSTGGSQF VHFNKNVDHD VAID

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MEEMTVRGED STDMISAIPV NEDCVGDSIS NDQAELNIDI DGSSSSPVDE DLVGVVVRNV  60
DEAFELYNGY AYRVGFSVRK GQQRYKASTK SIQMKRFFCA KAGYKQKPNS GVKLYSKIDM  120
RTGCGAFVQF DVGGDGMWTV TKHLKEHNHE LCSFGKSHLL RSHRRVGNNQ LEYLKDMKSS  180
GVALADGMRF LKHQSGGSPL VGFTNRDAYN SMASVSLKCL DGSDSNSLIE IFRRRQSNEA  240
DFFFDFETIM TDQCSAMAAG ISMVFPTSRH CLCIWHIGEN SKKHIKALRN HKDLLDMFNC  300
VLKYTETEAE FEVYWTRMVT KYSCHKNTWL EKLYDCREKW CPAFNKDYFS GGILSSQRSE  360
STNHAISRRL SKTAGLCDFY SSFVSVISEW RSKENGEDFR CSQGVPAMMM DHVKLLSHAR  420
ECKYHVWRPD IDIIRHEVTF KAINLDICCS CKLFSELGIL CCHCLRILHV HCVSSIPDKY  480
ILKRWTKKVV EGRNVDIASV FYNGGVPSSI WAVEISRKFQ RLIVSSQDNS VARQFCDEAV  540
ENARKNIEAE IGDVNTEEGA VSSSSGIVQD PSSRRGKGVR NKRSSSVIEK KYNAARGRKS  600
AANKLASITK GSVQSLVLEN ISEIARDGYL VHPSTGGSQF VHFNKNVDHD VAID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	1e-35	FAR1 family protein