PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165178.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 213aa MW: 23319.8 Da PI: 7.9527

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	169.4	1.9e-52	21	152	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 +++CqdCGnq+kkdCa++RCRtCCksrgf+C thvkstWvp+ krr r+ +l++ +a++kr r + l++ XP_019165178.1 21 NSRCQDCGNQSKKDCAYMRCRTCCKSRGFECPTHVKSTWVPVCKRRPRHLHLSQH-------PLTANPKRYRPP-----QHLQNPPF------FG 97 679******************************************96555443.......234556666653.....33333333......33 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e ++P+evs +avfrcvrvs+vd+ge+++aYqt+v+i+GhvfkGiLydqG+e+ XP_019165178.1 98 GEEGNFPAEVSFPAVFRCVRVSAVDNGEDQYAYQTSVNIAGHVFKGILYDQGAES 152 45568*********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MMMTMRDEDD EEQEGGSSGS NSRCQDCGNQ SKKDCAYMRC RTCCKSRGFE CPTHVKSTWV 60 PVCKRRPRHL HLSQHPLTAN PKRYRPPQHL QNPPFFGGEE GNFPAEVSFP AVFRCVRVSA 120 VDNGEDQYAY QTSVNIAGHV FKGILYDQGA ESRYNTGGES SSGGGGGFQP PSNLLSTAAT 180 TAATSNASPP SYPSPFSTTN FMPGTHFFPY PKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	8e-51	SRS family protein